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An international collaboration involving the Earlham Institute, Norwich, UK, and the Iwate Biotechnology Research Centre, Japan, has for the first time provided a genome sequence for the white Guinea yam, a staple crop with huge economic and cultural significance on the African continent and a lifeline for millions of people.

Yams are a staple part of the Nigerian diet, with Nigeria accounting for around 70% of world yam production, but at current rates of consumption demand is beginning to outstrip supply of this economically important crop with huge cultural significance.

Deciphering the yam genome is of vital importance because, unlike other staple crops such as wheat, maize and rice, the crop is relatively undomesticated. Domesticated crops have advantages compared to their wild relatives when it comes to farming them, including easier usability and higher yields. Understanding the genomics of this crucial plant will help farmers increase yields and sustainability of yams.

The novel research entitled “Genome sequencing of the staple food crop white Guinea yam enables the development of a molecular marker for sex determination,” is openly accessible in the journal BMC Biology, shows just how that can be made possible. The high quality draft genome sequence is available in the public databases DDBJ and NCBI.

The big breakthrough from an international collaboration of institutes spanning the UK, Germany, Japan and Nigeria, has been in identifying the regions of the genome that determine sex in yams (dioecy), and knowledge of this rare feature is vital for improving the speed of marker-assisted breeding projects.

Dioecy, plants having separate males and females, is relatively rare and occurs only in about 5-6% of flowering plants, including yams and asparagus. Therefore, understanding the process in yams could help in improving other economically important crops.

Most importantly for Central and West Africa, this new knowledge will help transform yams from being a neglected “orphan” crop. With assisted breeding programmes, the crop can be better domesticated, boosting food security and economic well-being in an area undergoing the world’s most rapid population expansion.

Benjamen White, who led Earlham Institute’s contribution, said, “Having a reference sequence for the white Guinea yam gives us the unique opportunity to gain a better understanding of dioecy, a very rare trait in flowering plants, in a species that’s very evolutionarily differentiated from most of what’s been sequenced so far. Understanding this trait and having a genomic resource for white Guinea yam will be invaluable in breeding a better yam, one that will improve food security in West and Central Africa, and the livelihood of smallholder farmers there.”

Dr. Robert Asiedu, Director, Research for Development, for The International Institute of Tropical Agriculture-West Africa, Ibadan, Nigeria, said, “This is an important breakthrough. It means that yam has joined those crops with a full DNA sequence, a development which started with rice some years ago. The implications are profound. The full DNA sequence will greatly facilitate our understanding of the genetic control of key traits such as flowering, diseases, and others including quality traits, and this in turn will make the breeding of new varieties both faster and more precise.”

Professor Ryohei Terauchi, lead author, of Kyoto University and Iwate Biotechnology Research Centre, Japan, said, “This will help to overcome some of the many challenges facing yam farmers in Africa and other parts of the world. These include pests and diseases, post-harvest losses and the need to develop more sustainable systems of farming for the crop.”

Further facts

West and Central Africa, the main region for yam production worldwide, contributed approximately 96% of the 63 million tons of yam produced globally in 2013. The value of yam production exceeds all other African staple crops and is worth more than maize, rice and sorghum, combined.

Nigeria is set to become the third largest country in the world by 2050, with a population of over 300 million, surpassing the US. It is vital we work on breeding improved crops to help feed these and the other 9 billion people expected in 2050.

Yam cultivation is constrained by many factors. Seeds are not often used as starting materials; instead, yams are commonly propagated clonally using small whole tubers (referred to as “seed yams”) or tuber pieces. Yams are also highly vulnerable to a plethora of pests and diseases that can reduce yields by as much as 90%.

There are 600 odd species of yam and 10 have been independently domesticated in West Africa, Southeast Asia, and the Pacific and Caribbean islands.

Yam tubers can grow to over 1.5 m and weight 70 kg.

In June 2017, Nigeria began exporting certified yam to the UK and US for the first time.

Further technical detail

The study identified the genomic region associated with sex in yams, found yam sex to be to be female heterogametic (male=ZZ, female=ZW), and developed a molecular marker for sexing yams at the seedling stage.

Phylogentic analysis also showed yam to likely have a unique lineage within the monocots. Sequencing of the 594 Mb genome was carried out using the Illumina MiSeq and HiSeq 2500 platforms, using mate-pair, BAC-end, paired-end and RAD-tag libraries. Assembly was done using the ALLPAHTS-LG pipeline and a linkage-map was used to anchor the scaffolds into pseudo-molecules.

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  108. Hi, possibly i’m being a little off topic here, but I was browsing your site and it looks stimulating. I’m writing a blog and trying to make it look neat, but everytime I touch it I mess something up. Did you design the blog yourself?

  109. Hello there! This article couldn’t be written any better! Looking at this article reminds me of my previous roommate! He continually kept preaching about this. I will send this information to him. Fairly certain he will have a great read. I appreciate you for sharing!

  110. I’m amazed, I must say. Rarely do I encounter a blog that’s equally educative and engaging, and let me tell you, you have hit the nail on the head. The issue is something that too few folks are speaking intelligently about. Now i’m very happy I found this during my search for something regarding this.

  111. Hello there! This article couldn’t be written any better! Reading through this article reminds me of my previous roommate! He continually kept preaching about this. I am going to forward this article to him. Pretty sure he’s going to have a very good read. Thanks for sharing!

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  113. I think that everything published made a ton of sense. But,
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    When I look at your blog site in Safari, it looks fine but
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  115. An outstanding share! I’ve just forwarded this onto a co-worker who was conducting a little homework on this. And he in fact bought me breakfast simply because I stumbled upon it for him… lol. So allow me to reword this…. Thank YOU for the meal!! But yeah, thanks for spending the time to discuss this issue here on your site.

  116. Right here is the right site for everyone who wishes to understand this topic. You understand so much its almost hard to argue with you (not that I actually will need to…HaHa). You certainly put a new spin on a subject that’s been discussed for years. Excellent stuff, just excellent.

  117. Unquestionably believe that which you said. Your favorite reason seemed to be on the net the easiest thing to be aware of. I say to you, I certainly get annoyed while people consider worries that they plainly don’t know about. You managed to hit the nail on the head. Will probably be back to get more. Thanks

  118. I absolutely love your website.. Pleasant colors & theme. Did you build this web site yourself? Please reply back as I’m wanting to create my very own website and would love to find out where you got this from or exactly what the theme is named. Appreciate it.

  119. Howdy! Quick question that’s totally off topic. Do you know how to make your site mobile friendly?
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  120. it is a really nice point of view. I usually meet people who rather say what they suppose others want to hear. Good and well written! I will come back to your site for sure!

  121. Hello this is kinda of off topic but I was wondering if blogs use WYSIWYG editors or if you have to manually code with HTML. I’m starting a blog soon but have no coding knowledge so I wanted to get advice from someone with experience. Any help would be enormously appreciated!

  122. Having read this I believed it was rather enlightening. I appreciate you finding the time and effort to put this informative article together. I once again find myself personally spending a lot of time both reading and leaving comments. But so what, it was still worthwhile.

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  127. I’m amazed, I must say. Rarely do I come across a blog that’s both educative and entertaining, and without a doubt, you have hit the nail on the head. The problem is something not enough folks are speaking intelligently about. Now i’m very happy I stumbled across this during my search for something relating to this.

  128. Oh my goodness! Amazing article dude! Many thanks, However I am experiencing issues with your RSS. I don’t know the reason why I am unable to join it. Is there anybody having identical RSS issues? Anyone that knows the answer will you kindly respond? Thanx!!

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  132. My coder is trying to convince me to move to .net from PHP. I have always disliked the idea because of the expenses. But he’s tryiong none the less. I’ve been using WordPress on numerous websites for about a year and am nervous about switching to another platform. I have heard great things about blogengine.net. Is there a way I can import all my wordpress posts into it? Any help would be really appreciated!

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  134. Can I just say what a relief to discover someone that genuinely understands what they’re talking about on the web. You actually understand how to bring an issue to light and make it important. More and more people need to read this and understand this side of the story. I was surprised you are not more popular since you certainly have the gift.

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